Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015834684.1_cds_XP_016505709.1_19016
CDS Infomation

[gene=LOC107823544] [db_xref=GeneID:107823544] [protein=protein RRP6-like 2] [protein_id=XP_016505709.1] [location=join(15585..15983,16821..16973,18715..18873,18944..19027,21990..22069,22324..22374,24522..24630,25237..25319,25514..25559,25663..25750,25834..26003,26392..26598,26692..26787,26977..27741)] [gbkey=CDS]
Sequence

ATGTCGTTTCCGGGGGAGGATCCGGATGACGTGGAAACCGGAGATTGGCTGGTCCACATA
AACGACGACGTGTTTGAGAAACTGGCATCATCCTTGGATGAGTTTAGGTTGTTGAGAGAG
AAAGAAGAGGAGAGTGGCGTGAAGAATATGGAGGACGGGTTTCAATTGGTGAGTCGAAAG
AAGAATAGAAAAGTAGAACATAATAGTAATGTAAGTAGCGTGGAGAAGGAGAAGGGGGTG
AAAGTGGCTACGAAAGTGAAGCCAAAGATTCCGTTTCATATACCAAGCATCCCGAGGCCG
CAGGACGAGTATAAAATTATTGTTAACAACAAAAACCAGCCTTTTCAGCATGTTTGGTTG
CAGAGGACCGATGATGGTTCCAGGTTTATGCATCCTCTGGAAAAGTTTGCTCCCTCAGAC
TTTGTTGAGAGTGCTGGCATCATTGAGCCTGTCAAACCTCCTCCATTGGAGATTACCCCA
TTCAAGTTTGTGGAAGAGGTCAAAGATCTGAAGCAGTTAGCAGCCAAGTTGCGTGCTGTG
GATGAGTTTGCGGTTGATTTGGAGCATAATCAATATAGATCTTTTCAAGGATTGACATGC
TTGATGCAAATATCCACTAGAACTGAAGATTTTGTTGTTGACACTCTGAAGCTTCGCGTT
CATATTGGCCCATATCTAAGAGATGTTTTTAAGGACCACATGAAGAAAAAGGTGATGCAT
GGTGCTGATCGAGATATTGTGTGGCTTCAACGTGACTTTGGCATATACGTCTGCAATATG
TTCGACACTGGGCAGGCCTCAAGGGTTTTGAAACTGGGAAGAAACAGCTTGGAGTATCTG
CTACAACATTTTTGTGGAGTTACGGCAAACAAAGAGTATCAGAATGCAGATTGGAGATTA
CGCCCACTTCCTGTAGAGATGATGAGATATGCTAGAGAAGATACACACTATCTCTTGTAC
ATTTATGACGTTATGAGGATGGAATTGCTCTCTTCGTCTGCTGACATTGAATCTCCTGAT
GCTTCTCTATTAGAGGTGTACAAGCGCAGTTATGATATATGCATGCAGCTGTATGAAAAA
GAACTTTTGACTGATAGTTCATATCAACACATATATGGATTACAGGGAGCTGGATTCAAT
GCTCAGCAGCTTGCAATTGTTGCTGGGCTGTATGAGTGGAGAGATGTTATTGCCCGAGCA
GAAGATGAGAGTACTGGCTATGTTTTGCCGAACAAAGAACTTCTTGAAATTGCTAAGCAG
ATGCCTCTTACCACAAGCAAATTAAAGCGATCGATGAAATCAAAGCACCCATATGTTGAG
CGTAATCTTGGTGCTGTTGTCAGCATCATTAGGCAGTCTGTTCAAAATTCGGCTGCATAT
GAAGCAGCTGTGGAACTTCTGAAAGAAAGGCGCTTAGAATTACCAGCTGAAGAAGACATT
GTGGCTACTGAGGGCGCTGAAATGTTAGTTGAAACTTCTGAGCCACTGAAAGCAGCAACA
GGGGCAGAAACTTCAATTGTTTGTAGTTCACCTGAAAGTGCTGTCACCAAAGTTGGTTTT
AATGGACCCGGTGACACCTCTGAACATCGTAGTGAGCATGGTGGTTTAAGAGCTACTTCT
TCAGGACAGGTGGAAGTAACTATTCAGGCAATTAAGAAACCCAGCCGTGGTCTTGGAATG
TTACTAGGGAGTGCAGCAAAGAGGAAGCTGCACCCTGATAAAAAAGAGCAGGAAGAGATC
CAAGTGCAGCAGATCAAGTCTTCGGTGAGCCTTCCATTCCATGCATTTTCAGGCAGGACT
GAACAGTTGCAGCAAGCTGCAACAGCACCTGCTAAAACATTACAAATTAACCATAGAGAG
GAACCTGTTGCTACTAATTCCAAGTTAGATGTTATAACCCTGGACACTGATTCAGATGAC
GGGAAATCATTAAAAGGTGAGCTATCAATTGGAGAACAGGAAAATTCCTTTGCCATGCCG
GTAGCTACTTCAAAGTTAGAAGATGTTATCTTACTGGACACTGATTCAGATCTTGAGGGA
TCAGTCAAAGATGACTCAGAAGCTGCTAACAATCCACCTGAGTGTGGGGAAAACAAAATT
GCAGGTTCTGCTGAGGAGATGGATGAAGGGGATGAGAACATGTCCCTGTGTGATCTTTCC
TCTAGCTTCAAGAAGTGTTTCCATTCAATAAGTCAAAAGAGTAAGGCGCAGCTCACTGAG
AAAGCACAAGCACATGAAGGCCAGTTGAAAGTCCAGCCTTTTGACTACGAAGCAGCAAGG
AAGCAAGTGTTATTTGGAGAAGATCCAGGTAAAAAAAAGCCGGAAACTGAAGGTGATGAG
CATCGTAGGAGTAGGACTGGTAAAGGTGATAAGAAGAAGGATTTACTCTTAGGTCAGCCG
CCAAATATTGAAGGGACAGCAGAGTTCCAGCAAGGTAGAAGGCGTCAAGCTTTTCCAGCT
ACTGGAAATCGAAGCTATACTTTCCGTTAG

Peptide Sequence

PEP ID

XP_016505709.1
PEP Infomation

PREDICTED: protein RRP6-like 2 [Nicotiana tabacum]
Sequence

MSFPGEDPDDVETGDWLVHINDDVFEKLASSLDEFRLLREKEEESGVKNMEDGFQLVSRK
KNRKVEHNSNVSSVEKEKGVKVATKVKPKIPFHIPSIPRPQDEYKIIVNNKNQPFQHVWL
QRTDDGSRFMHPLEKFAPSDFVESAGIIEPVKPPPLEITPFKFVEEVKDLKQLAAKLRAV
DEFAVDLEHNQYRSFQGLTCLMQISTRTEDFVVDTLKLRVHIGPYLRDVFKDHMKKKVMH
GADRDIVWLQRDFGIYVCNMFDTGQASRVLKLGRNSLEYLLQHFCGVTANKEYQNADWRL
RPLPVEMMRYAREDTHYLLYIYDVMRMELLSSSADIESPDASLLEVYKRSYDICMQLYEK
ELLTDSSYQHIYGLQGAGFNAQQLAIVAGLYEWRDVIARAEDESTGYVLPNKELLEIAKQ
MPLTTSKLKRSMKSKHPYVERNLGAVVSIIRQSVQNSAAYEAAVELLKERRLELPAEEDI
VATEGAEMLVETSEPLKAATGAETSIVCSSPESAVTKVGFNGPGDTSEHRSEHGGLRATS
SGQVEVTIQAIKKPSRGLGMLLGSAAKRKLHPDKKEQEEIQVQQIKSSVSLPFHAFSGRT
EQLQQAATAPAKTLQINHREEPVATNSKLDVITLDTDSDDGKSLKGELSIGEQENSFAMP
VATSKLEDVILLDTDSDLEGSVKDDSEAANNPPECGENKIAGSAEEMDEGDENMSLCDLS
SSFKKCFHSISQKSKAQLTEKAQAHEGQLKVQPFDYEAARKQVLFGEDPGKKKPETEGDE
HRRSRTGKGDKKKDLLLGQPPNIEGTAEFQQGRRRQAFPATGNRSYTFR

Transcript Sequence

Gene sequence data has not been registered.